Saving images
Specifying saving parameters at the 3rd Step, you already making the task to change the extension of your added files to the one needed.
Your images can be saved as - BMP, GIF, JP2, JPG, PCX, PNG, TGA, TIF, PDF, ICO. Choose the appropriate extension (BMP, TGA, PNG, TIF, etc.) to save selected files in.
To set saving settings for a specific format click the "Format settings" button:
Multi page saving parameters:
Input files can any multi page file. The option will work correctly only if specified output format can store more than one page/frame otherwise the only first page of multi page file will be saved.
Input files can be any; the option will work only if specified output format supports multi page saving. The name of the output multi page file will be the name of the first input file.
Input files can be any multi page file. Output file can be any of the available.

The basic renaming rules include:
All images will be saved at "Following folder" or "Same as source folder". "Browse:" through your file system to select one for the first case.
Setting the "Overwriting existing file" option to "Ask" you will be asked every time when writing on existing files, "Replace" means overwriting without confirmation, and existing files will not be overwritten if you choose the "Skip" option.
You can also try some additional features that include:
deleting all successfully processsed files after conversion ("Delete files after conversion"),
making the creation day of output files the same as input ("Set converted file date same as original")
"Convert with saving path info from root/current folder". Using this option your output files will be saved into a destination folder but into sub-folders with the same names as initial folders of input images have.
and
A prefix and/or a suffix can be specified for inclusion to the converted file name. There are following options: "Original filename", "Original exention", "Number", "Multipage number" as well as date and time strings in several formats.
See also:
How to save files to the fixed size
How to make transparent GIF/PNG (How to... > Make transparent GIF/PNG)